Postdoc Biophysicist at RIKEN

Contact

Email: jumpei.yamagishi[at]riken.jp

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CV

Experience

• April 2024 – Present : Special Postdoctoral Researcher (SPDR), RIKEN, Japan.

Education

• March 2024 : Ph.D. in Arts and Sciences, The University of Tokyo, Japan.
• March 2021 : Master in Arts and Sciences, The University of Tokyo, Japan.
• March 2019 : Bachelor in Arts and Sciences, The University of Tokyo, Japan.

Preprints (To be submitted)

1. Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Thermodynamic Constraint on the Coupling of Currency Metabolites. 2025

Papers (Peer-reviewed)

1. Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Global Constraint Principle for Microbial Growth Laws.  Proceedings of the National Academy of Sciences of the United States of America (PNAS), 122 (40), e2515031122, 2025.
   • Kudos
2. Jumpei F. Yamagishi and Kunihiko Kaneko. Universal Transitions between Growth and Dormancy via Intermediate Complex Formation.  Physical Review Letters 132, 118401, 2024.
3. Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Linear Response Theory of Evolved Metabolic Systems.  Physical Review Letters 131, 028401, 2023. (arXiv)
4. Masahiro Hoshino, Ryuna Nagayama, Kohei Yoshimura, Jumpei F. Yamagishi, and Sosuke Ito. Geometric speed limit for acceleration by natural selection in evolutionary processes.  Physical Review Research 5, 023127, 2023.
5. Jumpei F. Yamagishi and Tetsuhiro S. Hatakeyama. Microeconomics of metabolism: The Warburg effect as Giffen behaviour.  Bulletin of Mathematical Biology 83: 120, 2021.
6. Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Adaptation of metabolite leakiness leads to symbiotic chemical exchange and to a resilient microbial ecosystem.  PLoS Computational Biology 17(6): e1009143, 2021.
7. Jumpei F. Yamagishi and Kunihiko Kaneko. Chaos with a high-dimensional torus.  Physical Review Research 2, 023044, 2020.
8. Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Advantage of leakage of essential metabolites for cells.  Physical Review Letters 124, 048101, 2020.
9. Jumpei F. Yamagishi, Nen Saito, and Kunihiko Kaneko. Symbiotic Cell Differentiation and Cooperative Growth in Multicellular Aggregates.  PLoS Computational Biology 12(10), e1005042, 2016.

Honors and Awards